Fig. 4

The comparison of transposons between ‘Morex’ and other three barley genomes. The 350-bp right (red box) and left (blue box) flanking sequence of a transposon (black oval) was extracted from the ‘Morex’ genome and merged and used to search against other genomes and define the orthologous sequences. (A) Both transposon and the flanking sequences were identified in ‘Morex’ and other genomes. (B) Orthologous flanking sequences were identified in another genome, but no transposon was found between the right and left flanking sequences. (C) Multiple hits with same sequence identity were found for both flanking sequences in another genome. (D) One orthologous hit was defined for one flanking sequence, but multiple hits were identified for another flanking region. (E) One orthologous hit was defined for one flanking sequence, but no hit was identified for another flanking sequence. (F) no hit was identified for both flanking sequences