Table 1 Overview of data files/data sets

Data file 1

Figure 1. Study design

Image file (.jpg)

FigShare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.22820930) [10]

Data file 2

Model generation

Text document (.txt)

FigShare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.22821617) [11]

Data file 3

Figure 2. ATAC-seq quality control (QC)

Image file (.jpg)

FigShare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.22820948) [12]

Data file 4

Figure 3. QC of Hi-C samples

Image file (.jpg)

FigShare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.22821413) [13]

Data file 5

Figure 4. QC of RNA-seq samples and data

Image file (.jpg)

FigShare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.22821437) [14]

Data file 6

Code version

Text document (.txt)

FigShare (https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.22822115) [15]

Data set 1

ATAC-seq data files

FASTQ files

BigWig files

https://identifiers.org/arrayexpress:E-MTAB-12821 [16]

Data set 2

Hi-C data files

FASTQ files

mcool files

https://identifiers.org/arrayexpress:E-MTAB-12825 [17]

Data set 3

RNA-seq data files

FASTQ files

tablecounts

https://identifiers.org/arrayexpress:E-MTAB-12823 [18]