Genome-wide identification and expression analysis of PtJAZ gene family in poplar (Populus trichocarpa)

BMC Genomic Data

Table 1 The information of JAZ genes from Populus trichocarpa

Gene Name ^a	Gene Name ^b	Gene ID	Chromosome	Exon	Intron	Subcellular localization	α-helix (%)	Extended chain (%)	β-turn (%)	Random coil (%)
PtJAZ1	PtJAZ1	Potri.001G062500	Chr01	6	5	Nuclear	25.64	9.74	5.64	58.97
PtJAZ2	PtJAZ2	Potri.001G166200	Chr01	5	4	Nuclear	20.45	7.43	2.60	69.52
PtJAZ3	PtJAZ3	Potri.003G068900	Chr03	5	4	Nuclear	20.60	8.61	4.12	66.67
PtJAZ4	PtJAZ4	Potri.003G165000	Chr03	6	5	Nuclear	31.34	9.95	4.98	53.73
PtJAZ5	-	Potri.006G023301	Chr06	3	2	Nuclear	31.67	11.67	3.33	53.33
PtJAZ6	PtJAZ5	Potri.006G139400	Chr06	5	4	Nuclear	15.69	8.39	2.92	72.99
PtJAZ7	PtJAZ6	Potri.006G217200	Chr06	5	4	Nuclear	27.54	8.47	3.39	60.59
PtJAZ8	PtJAZ7	Potri.008G133400	Chr08	7	6	Nuclear	13.72	9.76	3.05	73.48
PtJAZ9	PtJAZ8	Potri.010G108200	Chr10	7	6	Nuclear	13.31	9.76	2.96	73.96
PtJAZ10	PtJAZ9	Potri.011G083900	Chr11	2	1	Nuclear	32.21	10.74	5.37	51.68
PtJAZ11	PtJAZ10	Potri.012G044900	Chr12	7	6	Nuclear	11.22	14.29	3.06	71.43
PtJAZ12	PtJAZ11	Potri.015G035800	Chr15	7	6	Nuclear	12.34	14.36	2.77	70.53
PtJAZ13	PtJAZ12	Potri.018G047100	Chr18	5	4	Nuclear	23.96	10.60	3.23	62.21

Note: Gene name^a is the name of PtJAZ gene family members identified in this study. Gene name^b is the name of PtJAZ gene family members identified by Wang et al. and Xia et al. [3, 7]

ISSN: 2730-6844