Table 1 Summary of transcriptome sequencing data quality control
Sample ID | Raw reads | Raw bases | Clean reads | Clean bases | Q20 (%) | Q30 (%) | GC content (%) | Total Mapping Genome Ratio (%) |
|---|---|---|---|---|---|---|---|---|
BSBG_1 | 53,615,366 | 8.04G | 53,012,390 | 7.95G | 97.7 | 93.98 | 48.75 | 91.8 |
BSBG_2 | 34,254,722 | 5.14G | 33,830,450 | 5.07G | 96.75 | 91.75 | 49.38 | 83.62 |
BSBG_3 | 30,522,678 | 4.58G | 29,983,046 | 4.5G | 94.79 | 88.85 | 52.97 | 75.97 |
TCG_1 | 80,702,816 | 12.11G | 80,000,290 | 12.0G | 97.74 | 94.13 | 48.99 | 75.76 |
TCG_2 | 67,579,204 | 10.14G | 66,943,960 | 10.04G | 97.6 | 93.84 | 48.95 | 76.08 |
TCG_3 | 50,988,020 | 7.65G | 50,396,748 | 7.56G | 97.67 | 93.88 | 48.61 | 78.58 |
BTG_1 | 46,785,306 | 7.02G | 46,224,544 | 6.93G | 97.57 | 93.66 | 48.6 | 83.76 |
BTG_2 | 41,872,340 | 6.28G | 41,073,866 | 6.16G | 97.55 | 93.77 | 49.09 | 79.48 |
BTG_3 | 40,782,188 | 6.12G | 40,150,030 | 6.02G | 97.58 | 93.68 | 47.88 | 81.64 |
TBG_1 | 25,774,252 | 3.87G | 25,242,040 | 3.79G | 95.81 | 89.93 | 50.74 | 75.86 |
TBG_2 | 66,684,520 | 10G | 65,465,158 | 9.82G | 97.17 | 93.16 | 48.76 | 81.88 |
TBG_3 | 53,179,342 | 7.98G | 52,374,882 | 7.86G | 97.9 | 94.48 | 51.08 | 80.67 |