Table 3 List of the number of single nucleotide polymorphisms (SNPs) and candidate genes identified by GWAS based on significant marker-trait associations (MTAs) and linkage disequilibrium (LD) block recognized from the putative regions in response to drought stress and plasticity

Trait

Chr.

LD block

Number of SNPs

Putative Region (bp)

Number of genes

Start

End

pTRL

1 A

Block 2

12

4.89E + 08

491,149,320

19

1B

Block 1

31

4.72E + 08

478,722,611

35

2 A

Block 1

7

89,597,473

90,425,823

5

2B

Block 3

8

5.82E + 08

587,815,112

8

3 A

Block 3

7

20,741,217

21,069,728

10

4B

Block 1

18

5.27E + 08

529,334,216

3

5 A

Block 1

19

7.05E + 08

705,565,704

3

pRAD

2 A

Block 2

9

6.91E + 08

691,181,098

8

7 A

no block

1

30,875,862

32,875,862

6

3B

Block 3

11

8.14E + 08

815,504,335

12

RSA

5 A

Block 2

9

4.79E + 08

479,203,284

4

5D

Block 3

3

5.5E + 08

549,852,162

1

2B

Block 1

10

65,225,853

65,808,631

4

NRF

2B

Block 1

21

2.38E + 08

244,534,860

24

1 A

Block 2

12

4.89E + 08

491,149,320

20

pNRT

2B

Block 2

4

5.79E + 08

580,020,356

9

3 A

Block 3

7

20,741,217

20,955,640

9

4B

Block 2

17

5.27E + 08

529,334,216

14

5 A

Block 1

19

7.05E + 08

705,565,704

9

3B

Block 1

15

6.94E + 08

696,288,703

14

RV

3B

Block 3

11

8.14E + 08

815,504,335

18