Table 2 Summary of all significant single nucleotide polymorphic (SNP) markers identified by GWAS in response to drought stress and plasticity
Trait | SNP markers | Chr. | MAF | Alleles | -log10p-value | r2 |
|---|---|---|---|---|---|---|
pTRL | AX-490,522,663 | 1 A | 0.422 | C:A | 5.389180199 | 0.135 |
AX-476,020,090 | 1B | 0.283 | G:T | 4.308803537 | 0.088 | |
AX-473,530,929 | 1B | 0.185 | C:T | 4.023214569 | 0.080 | |
AX-89,768,547 | 2 A | 0.19 | C:T | 4.015337694 | 0.098 | |
AX-585,941,635 | 2B | 0.195 | T:G | 5.44267329 | 0.136 | |
AX-20,836,050 | 3 A | 0.132 | T:G | 5.525885763 | 0.138 | |
AX-526,932,489 | 4B | 0.213 | A:G | 5.520611864 | 0.138 | |
AX-704,835,640 | 5 A | 0.458 | A:G | 5.391580949 | 0.134 | |
pRAD | AX-690,934,270 | 2 A | 0.075 | C:T | 4.724088353 | 0.077 |
AX-31,875,912 | 7 A | 0.111 | T:G | 5.737552483 | 0.084 | |
AX-700,388,976 | 7B | 0.167 | T:C | 5.412450212 | 0.077 | |
RSA | AX-814,183,606 | 3B | 0.276 | T:C | 4.98699415 | 0.105 |
AX-814,356,941 | 3B | 0.166 | G:T | 4.337157206 | 0.089 | |
AX-479,202,697 | 5 A | 0.438 | T:C | 4.667440359 | 0.119 | |
AX-549,850,407 | 5D | 0.4 | A:G | 4.012664497 | 0.082 | |
NRF | AX-65,417,557 | 2B | 0.464 | C:T | 4.016279017 | 0.081 |
AX-243,102,306 | 2B | 0.176 | A:C | 4.039619611 | 0.099 | |
pNRT | AX-490,522,663 | 1 A | 0.422 | C:A | 4.870631037 | 0.233 |
AX-579,774,126 | 2B | 0.214 | T:G | 4.341900688 | 0.233 | |
AX-20,836,050 | 3 A | 0.132 | T:G | 5.611405107 | 0.239 | |
AX-527,283,513 | 4B | 0.198 | A:G | 5.424745099 | 0.234 | |
AX-705,374,739 | 5 A | 0.458 | A:G | 4.674389488 | 0.233 | |
RV | AX-695,555,707 | 3B | 0.37 | A:G | 4.522651694 | 0.083 |
AX-814,183,606 | 3B | 0.276 | T:C | 4.529192156 | 0.086 |