Table 7 Run time of the 6 HA algorithms on hg19 and hg38 data
From: Pairwise comparative analysis of six haplotype assembly methods based on users’ experience
no.HI hg19 | DP1 | DP15 | DP30 |
|---|---|---|---|
HapCUT2 | 0m0.020s | 1m27.862s | 0m50.749s |
MixSIH | 166m53.561s | 167m55.217s | 60m32.406s |
PEATH | 9m9.623s | 9m17.898s | 6m55.111s |
WhatsHap | 21m47.595s | 18m32.676s | 7m47.223s |
SDhaP | 1042m19.795s | 2534m53.175s | 2395m2.418s |
MAtCHap | 145m32.562s | 74m7.937s | 2m5.477s |
no.HI hg38 | DP1 | DP15 | DP30 |
HapCUT2 | 1m38.330s | 1m27.657s | 1m15.984s |
MixSIH | 533m21.192s | 521m52.663s | 323m4.853s |
PEATH | 881m41.440s | 851m6.780s | 291m25.599s |
WhatsHap | 13m18.916s | 13m23.951s | 9m34.321s |
SDhaP | 243m21.180s | 385m9.746s | 107m9.087s |
MAtCHap | 47m46.312s | 42m7.180s | 23m57.059s |