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Table 6 Comparison metrics

From: Pairwise comparative analysis of six haplotype assembly methods based on users’ experience

Method

Switch Error

Mismatch Error

MEC

Run time

HapCUT2

X

X

 

X

MixSIH

X

  

X

PEATH

X

 

X

X

WhatsHap

X

  

X

SDhaP

X

 

X

X

MAtCHap

X

X

 

X

  1. The columns are (in order from left to right) haplotype assembly method, switch error, mismatch error, MEC, and run time. HA algorithms that use one of the four comparison metrics are marked with an “X”. Cells that are left blank mean that the specific algorithm in a row does not use this comparison metric
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BMC Genomic Data

ISSN: 2730-6844

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