Table 11 The specific input, output, and other key parameters used to run each algorithm
From: Pairwise comparative analysis of six haplotype assembly methods based on users’ experience
Algorithm | Input | Output | Other parameters |
|---|---|---|---|
HapCUT2 | --fragments DNA.fragment.file --vcf variant.VCF.file | --output output.file.txt | None |
MixSIH | Sorted DNA fragment file | output.file name | - a 0.05 |
PEATH | DNA fragment file | output.file name | None |
WhatsHap | Sorted BAM file | output.file name | None |
SDhaP | DNA fragment file | output.file name | None |
MAtCHap | -F sorted.fragment.file V variant.VCF.file | -L output.label -O output.folder | None |