An investigation of codon usage pattern analysis in pancreatitis associated genes

BMC Genomic Data

Table 1 Comparison of variance between average RSCU values of the pancreatitis gene set and housekeeping gene set

Codons	Average RSCU of HK gene set (n = 100)	Average RSCU of Pancreatitis gene set (n = 26)	p value	Level of significance	Codons	Average RSCU of HK gene set (n = 98)	Average RSCU of Pancreatitis gene set (n = 26)	p value	Level of significance
TTT	0.759	1.064	0.008	^**	GCC	1.773	1.522	0.088	NS
TTC	1.241	0.936	0.007	^**	GCA	0.781	1.024	0.010	^*
TTA	0.275	0.627	0.446	NS	GCG	0.422	0.324	0.049	^*
TTG	0.713	0.868	0.046	^*	TAT	0.710	0.791	0.365	NS
CTT	0.658	0.901	0.014	^*	TAC	1.290	1.133	0.199	NS
CTC	1.254	1.166	0.176	NS	CAT	0.750	0.804	0.510	NS
CTA	0.321	0.443	0.094	NS	CAC	1.230	1.042	0.119	NS
CTG	2.780	1.995	0.004	^**	CAA	0.362	0.572	0.008	^**
ATT	0.924	1.171	0.025	^*	CAG	1.638	1.428	0.015	^*
ATC	1.805	1.333	0.011	^*	AAT	0.724	0.952	0.022	^*
ATA	0.271	0.495	0.223	NS	AAC	1.256	0.971	0.009	^**
GTT	0.558	0.873	0.003	^**	AAA	0.577	0.831	0.007	^**
GTC	0.944	0.829	0.221	NS	AAG	1.423	1.092	0.001	^**
GTA	0.405	0.548	0.158	NS	GAT	0.787	1.065	0.006	^**
GTG	2.093	1.750	0.005	^**	GAC	1.213	0.935	0.004	^**
TCT	0.946	1.194	0.030	^*	GAA	0.666	0.945	0.002	^**
TCC	1.508	1.269	0.040	^*	GAG	1.334	1.055	0.001	^**
TCA	0.668	0.857	0.041	^*	TGT	0.837	0.907	0.323	NS
TCG	0.411	0.243	0.004	^**	TGC	1.103	1.016	0.278	NS
AGT	0.768	1.077	0.062	NS	CGT	0.677	0.561	0.959	NS
AGC	1.700	1.359	0.015	^*	CGC	1.462	1.041	0.039	^*
CCT	1.028	1.304	0.017	^*	CGA	0.673	0.736	0.636	NS
CCC	1.474	1.142	0.018	^*	CGG	1.283	1.016	0.090	NS
CCA	0.970	1.077	0.360	NS	AGA	0.833	1.466	0.060	NS
CCG	0.528	0.478	0.424	NS	AGG	1.073	1.180	0.859	NS
ACT	0.906	1.198	0.039	^*	GGT	0.619	0.671	0.205	NS
ACC	1.670	1.334	0.032	^*	GGC	1.591	1.276	0.004	^**
ACA	0.897	1.002	0.182	NS	GGA	0.788	1.116	0.280	NS
ACG	0.528	0.466	0.348	NS	GGG	1.001	0.936	0.148	NS
GCT	1.025	1.130	0.201	NS	–	–	–	–	–

ISSN: 2730-6844