Table 2 Application of SNSVD to the BRCA data. “edge.avg” represents the average of number of edges of modules in the PPI network, and “Fold Change” represents the fold change of “edge.avg” between the identified modules and random modules, and “d.avg” denotes the average of singular values of modules
From: Network-based cancer genomic data integration for pattern discovery
Method | σ | edge.avg | FC.avg | d.avg |
|---|---|---|---|---|
Sparse SVD | 0 | 27.05 | 1.27 | 25.74 |
SNSVD | 1 | 26.70 | 1.25 | 25.75 |
SNSVD | 10 | 35.05 | 1.64 | 25.70 |
SNSVD | 20 | 56.45 | 2.65 | 25.68 |
SNSVD | 40 | 85.95 | 4.03 | 24.91 |
SNSVD | 60 | 179.45 | 8.42 | 22.79 |
SNSVD | 80 | 132.10 | 6.20 | 22.94 |
SNSVD | 90 | 126.00 | 5.91 | 22.12 |
SNSVD | 100 | 108.10 | 5.07 | 21.61 |
SNSVD | 150 | 251.05 | 11.78 | 16.50 |
SNSVD | 200 | 231.30 | 10.86 | 10.24 |