From: Imputation of missing genotypes: an empirical evaluation of IMPUTE
Accuracy | ||||
---|---|---|---|---|
Missing | Random AA (258) | AA close to YRI (223) | AA close to CEU (35) | |
Complete missing | Overall | 85.66% (0.26, 0.75, 0.93, 1) | 87.00% (0.27, 0.77, 0.94, 1) | 97.14% (0.11, 0.91, 1.00, 1) |
 | 0.95 P.P. | 96.70% (0.00, 0.92, 0.99, 1) | 96.97% (0.00, 0.93, 0.99, 1) | 100.00% (0.00, 0.97, 1.00, 1) |
80% missing | Overall | 85.92% (0.29, 0.75, 0.93, 1) | 87.08% (0.26, 0.77, 0.94, 1) | 96.43% (0.07, 0.89, 1.00, 1) |
 | 0.95 P.P. | 96.79% (0.00, 0.92, 0.99, 1) | 97.06% (0.00, 0.93, 0.99, 1) | 100.00% (0.00, 1.00, 1.00, 1) |