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Table 2 Selection regions on the Z chromosome and candidate genes detected in the regions

From: Analysis of selection signatures on the Z chromosome of bidirectional selection broiler lines for the assessment of abdominal fat content

Candidate Region (Mb)

FST

EigenGWAS

XPEHH

Region (Mb)

Top snp

FST

Major Genes

Region (Mb)

Top snp

P-value

Major Genes

Region (Mb)

Top snp

XP EHH

Major Genes

0.55–0.75

0.55–0.75

rs14688003

0.56

WDR7

        

1.91–2.31

    

1.91–2.31

rs312273884

2.24E-07

SLC14A2

    

4.53–4.66

4.53–4.66

rs16704177

0.59

         

6.95–7.35

    

6.95–7.35

rs14689552

2.40E-05

KIAA1328

    

9.25–9.65

    

9.25–9.65

rs14784526

9.10E-07

ARHGEF39

    

11.23–11.57

11.23–11.57

rs16781096

0.57

SLC1A3,

        

13.95–14.35

    

13.95–14.35

rs16103326

7.97E-06

FGF10

    

16.75–19.95

19.81–19.95

rs14753903

0.52

 

16.75–17.42

rs16760225

7.23E-06

IL6ST

    
     

17.80–18.20

rs16099146

1.05E-06

PLK2

    
     

18.71–19.11

rs736458094

1.18E-05

ELOVL7

    

21.22–23.50

21.22–21.84

rs14755170

0.66

MAST4

22.90–23.50

rs313728591

7.91E-08

IQGAP2

    

28.08–28.19

28.08–28.19

rs16106682

0.55

KDM4C

        

32.13–33.63

    

32.13–32.53

rs16108416

2.11E-05

BNC2

    
     

33.03–33.63

rs314666735

1.66E-05

ADAMTSL1

    

36.03–40.49

36.03–36.25

rs16081040

0.54

ANXA1

39.07–39.87

rs16781643

3.03E-06

FRMD3

    
 

37.29–37.85

rs16768474

0.68

VPS13A

        
 

38.04–38.89

rs13817231

0.59

TLE4

        
 

39.22–39.45

rs14787078

0.54

         
 

40.33–40.49

rs14787751

0.57

NTRK2

        

47.72–51.04

47.72–47.58

rs15597824

0.59

FER

48.33–51.04

rs314662658

6.33E-06

EFNA5

    
 

50.89–51.02

rs14766378

0.73

FAM174A

        

52.48–53.77

52.50–52.89

rs16770232

0.53

SLC49A3

52.48–52.88

rs14768956

1.78E-06

PCGF3

    
     

53.37–53.77

rs14769714

2.52E-05

ATP5I

    

55.98–60.28

55.98–57.39

rs14751311

0.66

PCSK1

        
 

58.12–58.85

rs16758604

0.60

NR2F1

        
 

59.90–60.28

rs14748688

0.54

CETN3

        

61.68–73.63

71.43–71.58

rs14781326

0.55

PRR16

61.68–62.12

rs14774149

6.47E-07

 

65.73–67.97

rs14776247

−2.78

DNAJC25

     

62.78–63.58

rs14773275

3.68E-07

VCAN

    
     

63.88–64.28

rs16118182

2.81E-08

CKMT2

    
     

64.82–66.08

rs14774834

1.72E-07

SLC46A2

    
     

66.24–66.67

rs13788226

2.66E-07

DNAJC25

    
     

66.84–67.88

rs16775262

1.59E-06

ELAVL2

    
     

68.59–68.99

rs16776912

2.02E-08

MOB3B

    
     

69.41–70.09

rs14780063

2.38E-05

     
     

70.35–71.36

rs16125209

2.28E-06

ACO1

    
     

72.16–73.63

rs14781762

7.41E-09

KCNN2

    

78.84–82.42

    

78.84–79.27

rs15992604

5.72E-09

CDKN2A

    
     

79.67–80.45

rs14685714

1.75E-07

ZNF608

    
     

80.62–82.42

rs16683478

9.91E-09

PAX5

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