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Table 1 Overview of data files/data sets

From: De novo genome assembly and analysis unveil biosynthetic and metabolic potentials of Pseudomonas fragi A13BB

Label

Name of data file/data set

File types (file extension)

Data repository and identifier (DOI or accession number)

Data file 1

Composition of ultra-minimal substrate growth medium

Portable Document Format file (.pdf)

https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.12781193.v1 [7]

Data file 2

Quality distribution of Illumina reads

Portable Network Graphic file (.png)

https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13490967.v1 [11]

Data file 3

Basic quality statistics of GridION sequencing data

Portable Document Format file (.pdf)

https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13491147.v1 [13]

Data file 4

Average GridION read quality plot

Portable Network Graphic file (.png)

https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13491210.v1 [14]

Data file 5

Quast report

Portable Document Format file (.pdf)

https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13491228.v1 [17]

Data file 6

Short BUSCO summary

Portable Document Format file (.pdf)

https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13491234.v1 [19]

Data file 7

Assembly graph

Portable Network Graphic file (.png)

https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.14370608.v1 [21]

Data file 8

Predicted Genomic Islands of P. fragi A13BB

Portable Document Format file (.pdf)

https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13491300.v1 [30]

Data file 9

Metabolic pathways of interest in P. fragi A13BB and associated gene clusters

Portable Document Format file (.pdf)

https://0-doi-org.brum.beds.ac.uk/10.6084/m9.figshare.13507971.v1 [31]

Data set 1

Illumina and GridION sequencing reads

Fastq file (.fastq.gz)

https://identifiers.org/ncbi/insdc.sra:SRP251948 [37]

Data set 2

Genome assembly of P. fragi A13BB

Fasta file (.fna)

https://identifiers.org/insdc.gca:GCA_015767515.1 [38]