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Table 4 SSR marker loci associated with SRUE (PVE > 5%) and percentage of phenotypic variation explained by the locus derived from 266 markers and 506 rice accessions

From: Mining of favorable alleles for seed reserve utilization efficiency in Oryza sativa by means of association mapping

No#

Marker

Chrom

Position (cM)

2016

2017

P Value

PVEa (%)

FDRb

P Value

PVEa (%)

FDRb

1

RM128

1

123.2

0.003

5.85

0.003

0.003

5.91

0.003

2

RM297

1

126.5

0.009

12.01

0.009

0.009

11.98

0.009

3

RM525

2

143.7

0.007

6.40

0.007

0.007

6.42

0.007

4

RM232

3

76.7

0.003

5.61

0.003

0.003

5.63

0.003

5

RM3471

4

16.7

0.007

6.94

0.007

0.007

6.90

0.007

6

RM5818

5

144.9

0.002

5.03

0.002

0.002

5.07

0.002

7

RM7309

6

100.3

0.002

6.25

0.001

0.002

6.24

0.001

    

0.001

7.18

7.23E-04

0.001

7.10

9.06E-04

8

RM3138

6

110.6

0.001

5.20

0.001

0.001

5.21

0.001

9

RM3589

7

89.8

0.002

5.49

0.002

0.002

5.51

0.002

10

RM281

8

128.1

0.006

5.62

0.006

0.007

5.55

0.007

11

RM434

9

57.7

0.002

5.24

0.001

0.002

5.22

0.002

    

0.003

5.51

2.82E-03

0.003

5.52

2.73E-03

12

RM184

10

41.6

0.009

7.20

0.009

0.008

7.32

0.008

13

RM5746

12

39.4

0.007

5.94

0.007

0.008

5.85

0.008

  1. *a PVE: Percentage of phenotypic variation explained
  2. b FDR, False discovery rate
  3. Markers in bold font means the common loci identified by both GLM and MLM in this study and the rest by GLM only