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Table 1 Peak quantitative trait loci (QTLs) located in significant QTL regions by static allometry model. QTLs were assigned to one of four categories: Leaf Ontogenetic Allometry (LOA), and Leaf Static Allometry (LSA)

From: The genetic control of leaf allometry in the common bean, Phaseolus vulgaris

Time Point

Peak QTL name

Chromosome (Position)

QTL region (cM)

Left-right marker

Leaf mass (uM = exp(uz))

Leaf area (uA = exp(uy))

CC

JJ

Genetic effect

CC

JJ

Genetic effect

Popayan

 Time 1

LSA3.1

3 (32.5)

32.5

DiM_3–18 - DiM_3–19

0.063 ± 0.002

0.052 ± 0.002

0.011

13.736 ± 0.596

12.061 ± 0.469

1.674

LSA3.3

3 (74.2)

32.5–77.8

Bng216

0.063 ± 0.002

0.050 ± 0.002

0.013

13.736 ± 0.524

11.473 ± 0.581

2.263

LSA9.1

9 (30.1)

29.3–31.1

DiM_9–22

0.063 ± 0.002

0.050 ± 0.002

0.013

14.585 ± 0.588

10.914 ± 0.460

3.672

 Time 2

LSA7.5

7 (38.6)

29.5–56.0

DiM_7–8 - DiM_7–9

0.196 ± 0.005

0.151 ± 0.004

0.045

49.899 ± 1.394

39.646 ± 1.034

10.253

 Time 3

LSA6.1

6 (49.2)

44.2–54.4

Bng183 - DiM_6–25

0.262 ± 0.008

0.219 ± 0.006

0.043

64.072 ± 1.982

51.935 ± 1.251

12.136

LSA7.2

7 (35.9)

19.3–48.0

DiM_7–7 - DiM_7–8

0.267 ± 0.007

0.206 ± 0.005

0.061

64.716 ± 1.754

49.899 ± 1.304

14.817

 Time 4

LSA4.1

4 (62.7)

60.6–63.8

DiM_4–18 - DiM_4–19

0.262 ± 0.009

0.223 ± 0.007

0.039

62.803 ± 2.100

50.400 ± 1.737

12.402

LSA7.2

7 (35.9)

16.3–67.7

DiM_7–7-DiM_7–8

0.284 ± 0.007

0.208 ± 0.007

0.076

66.686 ± 1.672

47.465 ± 1.669

19.221

 Time 5

LSA7.2

7 (35.9)

17.3–52.0

DiM_7–7-DiM_7–8

0.262 ± 0.010

0.190 ± 0.008

0.072

59.146 ± 2.027

42.948 ± 1.900

16.197

Palmira

 Time 1

LSA3.1

3 (32.5)

32.5

DiM_3–18 - DiM 3–19

0.096 ± 0.014

0.081 ± 0.015

0.015

22.421 ± 2.582

18.174 ± 2.698

4.247

 Time 2

LSA7.3 (LOA7.2)

7 (36.6)

16.3–56.0

DiM_7–7 - DiM_7–8

0.32 ± 0.002

0.244 ± 0.002

0.074

89.121 ± 0.67

65.366 ± 0.614

23.440

 Time 3

LSA7.2

7 (35.9)

11.4–56.0

DiM_7–7 - DiM_7–8

0.454 ± 0.007

0.326 ± 0.006

0.128

100.484 ± 1.737

70.81 ± 1.833

29.674

 Time 4

LSA3.2

3 (33.8)

32.5–39.8

DiM_3–20

0.432 ± 0.016

0.449 ± 0.009

−0.017

80.64 ± 2.975

90.922 ± 1.933

−10.281

LSA7.1

7 (33.5)

10.4–56.0

DiM_7–7 - DiM_7–8

0.522 ± 0.011

0.372 ± 0.009

0.150

100.484 ± 2.612

73.7 ± 2.09

26.784

 Time 5

LSA7.2

7 (35.9)

14.3–60.9

DiM_7–7 - DiM_7–8

0.497 ± 0.018

0.368 ± 0.014

0.129

93.691 ± 3.118

69.408 ± 2.748

24.283

  1. The QTL information at each time point by static allometry model for Palmira (PAL) and Popayan (POP) in Colombia was shown. Maximum likelihood estimates (MLEs) of parameters uM and uA (the power transformations of uz and uy) and standard errors of the estimates for each QTL found to be different in the common bean (Phaseolus vulgaris) allometry relationship at two different sites, Palmira and Popayan. uM and uA are the genotypic values of leaf mass and leaf area for genotype CC and JJ. QTL region, the significant distribution range on chromosome. Peak QTL, the QTL located at the peak of the significant QTL region. Left-right marker, left marker and right marker on the both sides of peak QTL which located at the interval of two markers, particularly some peak QTLs located at a single marker