Skip to main content

Table 2 Characteristics of the microsatellite markers and their genetic variation statistics in P. sinensis

From: Genetic diversity and structure of Chinese grass shrimp, Palaemonetes sinensis, inferred from transcriptome-derived microsatellite markers

Locus name

Forward primer sequence(5′-3′)

Reverse primer sequence(5′-3′)

Repeat

unit

Annealing

temperature

Size

range (bp)

N A

N E

H o

H e

A r

r

F IS

P HWE

c119_g1_i1

F:GGGAGGAGTTTCGTATTCGTT

R:TTTTGCCTCCTCTTTTCAGG

(TGA)5

54 °C

251–263

4

1.096

0.072

0.087

2.462

0.021

0.160

0.278

c251_g1_i1

F:TGAATGACGTCACGGTTGTT

R:CGTGGAGATGTGGGAGTGTA

(AC)8

54 °C

236–248

7

1.654

0.335

0.395

4.479

0.042

0.134

0.008**

c317_g1_i1

F:GGGATGGCCTGTAAAGTTGA

R:CACCTCCAGTCTCAAAAGCC

(CAT)5

54 °C

269–275

5

1.128

0.100

0.114

2.946

0.014

0.072

0.144

c341_g1_i1

F:GCTGTTGAGCACTTTCATTCA

R:GGGCTCATGTTAAATCCAAGA

(TA)7

54 °C

258–272

9

1.938

0.295

0.484

4.407

0.068

0.211

0.000**

c864_g1_i1

F:GATGCGATAGATGACGCCTT

R:ATGCTTAGGTGGTGGAGTGG

(TGA)6

54 °C

263–272

4

1.204

0.185

0.169

2.563

0.000

−0.178*

0.973

c1089_g1_i1

F:GTGATCCAGGTCGAACACAA

R:TTCTACCCGGTGCTTTTGAC

(GGA)5

54 °C

196–201

5

2.005

0.430

0.501

2.707

0.044

0.055*

0.000**

c870_g2_i1

F:TGGTTCTATCCGCAGATTCC

R:CCTTCCTGTTGGTGGTGTCT

(TCA)6

54 °C

189–192

2

1.137

0.072

0.120

1.994

0.003

0.065*

0.000**

c679_g1_i1

F:TTTGCTGGCAAGGAACATTA

R:AGATCACCCCTCTTCCTTCC

(AGG)5

54 °C

92–114

4

2.887

0.596

0.654

3.838

0.022

0.035*

0.194

c792_g1_i1

F:TTGGCTTCAGCAAATCCTTT

R:TCCTTTCGCTTTTGATACCAG

(AT)6

54 °C

198–208

6

1.643

0.235

0.391

2.991

0.094

0.325*

0.000**

c102_g1_i1

F:TGGTGATGGGGATTTCCTTA

R:TTCTTTTATTGTCTGATTATGCCA

(AT)6

54 °C

256–264

5

1.930

0.282

0.482

4.813

0.094

0.246*

0.000**

c1157_g2_i1

F:ATGTCGGAACGGACAGAAAA

R:TGAAGCAGAGGAAACGTTGA

(GA)7

54 °C

105–109

3

2.305

0.254

0.566

3.000

0.093

0.333*

0.000**

c1198_g1_i1

F:TCTGGAAAATTTTTGGGCAC

R:GAAATTAAGGTTTAGCACATTCTCC

(TA)7

54 °C

165–201

6

3.136

0.430

0.681

4.326

0.131

0.320*

0.000**

c1730_g1_i1

F:TGAAATTCCAGGAAAGGCTG

R:CGTGTCCTTCCACGAAAGAG

(GGA)5

54 °C

191–209

13

3.291

0.511

0.696

6.042

0.043

0.094

0.055

c1747_g1_i1

F:CAGGAGACCATGTAGAATTACGC

R:TTTGATGACAACGTGGCACT

(CA)7

54 °C

186–222

13

3.628

0.542

0.724

7.478

0.046

0.081*

0.000**

c2017_g1_i1

F:GTGATTTGACGTGACGAACG

R:AGACTGCAGGAGAGGCTCAG

(GAT)6

54 °C

253–271

5

1.139

0.129

0.122

3.021

0.000

−0.097*

1.000

c2591_g1_i1

F:GCATCAGAAACTTGGAGCCT

R:ACAGTAGCTAGGGGGCTTGG

(TG)10

54 °C

148–154

2

1.006

0.006

0.006

1.213

0.001

−0.013*

1.000

  1. NA: number of alleles; NE: number of effective alleles; Ho: observed heterozygosity; He: excepted heterozygosity; Ar: allele richness; r: null allele frequency; FIS: inbreeding coefficient, *Significance value from 95% confidence interval; PHWE: P-value for deviation from Hardy-Weinberg equilibrium, ** highly significant (P < 0.01)