From: Copy number variation of Ppd-B1 is the major determinant of heading time in durum wheat
Marker | Chr. | Pos. (cM)a | Pos. (Mbp)b | P value | pG-singled | pG-jointe | pG-Ppdf | Effect | Freq.g(SD, WD) |
---|---|---|---|---|---|---|---|---|---|
S4540471 | 1A | 145.07 | 526,685,715 | 9.02e-4 | 5.88 | 1.56 | 1.43 | 0.76 | 0.60 (0.66, 0.57) |
S2256343 | 2A | 23.92 | 36,364,298 | 6.51e-4 | 20.78 | 5.32 | 5.22 | −1.35 | 0.45 (0.73, 0.28) |
S5579626 | 2A | 25.56 | 35,596,685c | 3.32e-4 | 20.81 | 0.85 | 0.87 | −1.80 | 0.15 (0.25, 0.10) |
S3064800 | 2A | 31.13 | 35,627,791 | 2.04e-4 | 4.75 | 1.42 | 1.48 | −0.83 | 0.20 (0.25, 0.18) |
S2252351 | 2A | 33.58 | 35,846,102 | 5.66e-4 | 4.33 | 0.05 | 0.05 | −0.84 | 0.20 (0.23, 0.18) |
Ppd-B1 CNV | 2B | 22.64 | 22.92 | −2.00 | |||||
D3935165 | 2B | 36.35 | 53,704,532 | 3.27e-6 | 23.05 | 0.01 | 0.00 | −1.86 | 0.15 (0.24, 0.10) |
S1713466 | 2B | 36.35 | 53,972,352 | 3.31e-5 | 24.24 | 0.40 | 0.39 | −1.92 | 0.17 (0.27, 0.11) |
S2279856 | 2B | 37.15 | 56,191,088 | 1.62e-5 | 21.72 | 0.28 | 0.36 | −1.85 | 0.15 (0.25, 0.09) |
D1099896 | 2B | 39.51 | 53,406,376 | 4.45e-4 | 18.18 | 0.44 | 0.43 | −1.89 | 0.11 (0.28, 0.01) |
S1106958 | 2B | 40.74 | 53,701,140 | 1.45e-6 | 24.84 | 26.15 | 3.72 | −1.98 | 0.15 (0.26, 0.09) |
D12735838 | 2B | 40.74 | 53,067,983 | 2.81e-6 | 25.04 | 0.24 | 0.22 | −1.85 | 0.17 (0.29, 0.10) |
S3021610 | 2B | 40.74 | 53,972,355 | 4.24e-5 | 23.31 | 0.00 | 0.00 | −1.92 | 0.16 (0.26, 0.10) |
D4004228 | 2B | 40.74 | 56,011,661 | 6.34e-5 | 22.76 | 0.08 | 0.06 | −1.81 | 0.16 (0.26, 0.10) |
S1353553 | 2B | 40.74 | 54,098,441 | 1.13e-4 | 21.42 | 0.05 | 0.05 | −1.84 | 0.16 (0.24, 0.11) |
D6040039 | 2B | 40.74 | 53,972,355 | 1.98e-4 | 21.59 | 0.35 | 0.30 | −1.73 | 0.16 (0.26, 0.11) |
S986135 | 2B | 40.99 | 54,516,891 | 5.42e-5 | 22.86 | 0.05 | 0.10 | −1.91 | 0.15 (0.26, 0.09) |
S1124640 | 2B | 41.86 | 54,468,610 | 1.67e-4 | 20.99 | 0.13 | 0.10 | −1.87 | 0.15 (0.24, 0.10) |
S1128199 | 2B | 61.42 | – | 8.21e-4 | 15.75 | 1.02 | 0.92 | −1.63 | 0.15 (0.18, 0.13) |
S1012837 | 5B | 29.33 | 82,403,619 | 7.51e-4 | 10.66 | 3.93 | 4.19 | −1.05 | 0.30 (0.48, 0.19) |
D4003053 | 6B | 5.12 | 49,777,628 | 6.04e-4 | 4.39 | 3.57 | 3.70 | 0.68 | 0.74 (0.74, 0.74) |
D1127811 | 6B | 34.67 | 620,269,666 | 7.54e-4 | 18.77 | 3.91 | 3.79 | −1.42 | 0.23 (0.44, 0.11) |
D1065475 | 7B | 11.81 | 7,619,225 | 1.94e-5 | 7.22 | 0.01 | 0.00 | 0.76 | 0.57 (0.73, 0.46) |
S1203678 | 7B | 14.14 | 9,823,914 | 1.11e-6 | 8.21 | 0.07 | 0.16 | −0.87 | 0.48 (0.68, 0.40) |
D2253580 | 7B | 16.94 | 9,998,428 | 3.36e-7 | 9.15 | 9.47 | 9.34 | 0.85 | 0.54 (0.70, 0.44) |