From: Insertion-deletion polymorphisms (indels) as genetic markers in natural populations
No. | Chromosome | Position | Primer F | Primer R | Fragment length (bp) | He |
---|---|---|---|---|---|---|
1 | 23 | 35377868 | ccaggcttgtgtgaagctct | gccttgttggtttcagtggt | 126 | 0.43 |
2 | 21 | 44954960 | tgtcatttggccagatctctaa | ttggattaaccctaccacacg | 117 | 0.26 |
3 | 5 | 56432744 | catgctgcttgaagtgcaata | tctctgtgtgcctctcatgaat | 123 | 0.00 |
4 | 6 | 31824728 | cacaatgaccacttattaaagattaca | ctaggatgagagcccagctt | 139 | 0.00 |
5 | 29 | 17604384 | tgtcaggtttcatatccttttgtg | gaactatccttaaatagaaccaatgc | 111 | 0.29 |
6 | 15 | 52623379 | ttcacatccatctgtcttgga | acccgggagtttgcctatac | 125 | 0.20 |
7 | 12 | 4364137 | ctcctgttccctccagca | ggaccatgctgtggatctg | 115 | 0.17 |
8 | 30 | 32665884 | agaccagggtctgaatttgc | tttccaaggtcccaccacta | 116 | 0.24 |
9 | 7 | 52754426 | ttcacaaattgctatacctaaaaatg | ttcctgtgggcataataatca | 136 | 0.48 |
10 | 26 | 32666193 | tccaagaacaaagaagtaatgtaaaa | ggaattgatttactgatagtgagatg | 130 | 0.39 |
11 | 37 | 18098142 | gaaaggtccctctgaattgaa | tctgtgctcttcactggaaaaa | 122 | 0.18 |
12 | 14 | 38060282 | gtgtgctctaggggccatt | gaatgaaatcatggaagagcaa | 115 | 0.30 |
13 | 17 | 46184901 | gaagggacaaaaccttggaa | tgaactaccctcgtgatcca | 139 | 0.37 |
14 | 28 | 38785954 | aaaggagggcttgcagtttt | ttctccttttagaccctttgtca | 90 | 0.32 |
15 | 25 | 8846761 | tgccttagcgttggcatt | tggtgctctttcttgttgga | 169 | 0.36 |
16 | 34 | 7543229 | caggagcaaagtaagggtaatca | gctttggtattgttgattctattgtaa | 90 | 0.44 |
17 | 20 | 21505420 | aatggggacaccagtcactt | tgggagttctggctccac | 139 | 0.00 |
18 | 1 | 32746664 | tcctgcggcagtttgg | ccaagattgtgcatgtcagg | 104 | 0.36 |
19 | 23 | 42171234 | caaaggcaagaaggcagatg | tacatggtccctgtgttcca | 81 | 0.51 |
20 | 35 | 25523850 | ttagcgatgttgagcgttttt | ttcccttaagaaataggcagagg | 92 | Excluded |
21 | 22 | 41896467 | tgcaaaggagtgggaattatc | tggatgttaaaaacctggtatattgt | 164 | 0.37 |
22 | 30 | 32665884 | ccaagccccttccaatacta | tttccaaggtcccaccacta | 92 | 0.29 |
23 | 10 | 55417044 | tgctttgcatgttacattcttca | catgtcatagtcacatgctgtacg | 151 | 0.32 |
24 | 22 | 20849044 | tattgctgccctgtttcaga | gctgaaggaaatatctgttgaatg | 102 | 0.16 |
25 | 24 | 40849741 | ctgcggtctcacatccttag | tgagggggatttgatctctt | 69 | 0.14 |
26 | 31 | 8148287 | tctgctcaggtttagccttg | ggatgcaagaaaatctgctg | 80 | 0.43 |
27 | 3 | 67261495 | ttactcccagctctgtgcat | gacccaggtggggatatcta | 88 | 0.06 |
28 | 26 | 37097342 | tgcccccactactcttgc | aaagggtgatggtcctttga | 98 | 0.09 |
29 | 1 | 109880549 | tgttgagcccttgaaatgag | agcgaaaagtggcagtgg | 68 | 0.51 |
30 | 13 | 20047698 | tggctgccccatcttatg | cacaatggcagaacacgag | 78 | 0.06 |
31 | 10 | 13999933 | gccttcttcctctgcctct | ctcaggcaggcaaataaaaa | 90 | 0.13 |
32 | 5 | 6092689 | gcttgggaaatcatggtca | gctaaggaaagcaagctgga | 100 | 0.50 |
33 | 3 | 52499600 | tctgactggcctccttcg | attcaagtgtgcccgagag | 67 | 0.51 |
34 | 2 | 87005110 | gccgccgtgtcttgtc | cgaatgcgtgcttaccg | 80 | 0.07 |
35 | 5 | 16794632 | cgatgctggtgaggaagc | ccatccctgagccacct | 91 | Excluded |
36 | 1 | 40637985 | aagggccgatgccagt | caggttcttgtttccccaaa | 100 | 0.42 |
37 | 14 | 16593885 | cccaggtgccccttattt | ggctcatgctgctctgg | 110 | 0.00 |
38 | 38 | 3128143 | gcttcccttgtttctttcca | tgcccatgtaccaaatgaa | 121 | 0.51 |
39 | 6 | 78974466 | gtagggcaagcggcaag | tgcttcctggacatttgga | 110 | 0.14 |
40 | 4 | 68490768 | ttgcttgggaacatggag | gcccttgtcatccactagga | 121 | 0.00 |
41 | 1 | 41518626 | cctggtgcaggttgcag | ccttcggagcccatgc | 106 | 0.42 |
42 | 19 | 29399024 | caggacacttgcaccagatt | gagcagaggtgaggctgaa | 120 | 0.00 |
43 | 12 | 27463695 | cagtagccaaattgtggaagc | accacgtagtcttgacccattc | 68 | 0.30 |
44 | 16 | 10834862 | gttcccttctcagaggacca | caatgagtgaagggggtcag | 69 | 0.00 |
45 | 14 | 38539141 | gagtggcacacgagcactt | gcaggactgtctggaggttg | 68 | 0.31 |
46 | 8 | 60840667 | tgcctgagggagctgtatatg | tctcattgtggagcaaagacat | 75 | 0.51 |
47 | 5 | 36083663 | gctttgttgtaagcagcgata | tgtgagaaactccattgcctta | 74 | 0.21 |
48 | 7 | 53313567 | agaaggggcagacttgagg | tccctcatttcacaagctga | 75 | 0.19 |
49 | 1 | 88201810 | tggctcattgatttgtgattct | ggccagctcttcttgttgag | 78 | 0.00 |
50 | 14 | 61925547 | gggttctctagggagatgacaa | aggacccaagtggattctga | 83 | Excluded |
51 | 7 | 17212546 | gtcatggtgacatcgcagtt | gcctcatgccaatgagagac | 85 | 0.12 |
52 | 2 | 67041786 | gatggccgattgtacatcaa | tggttgcagggaagattagg | 95 | 0.34 |
53 | 5 | 3965764 | ccgtctagttgtcgggtgtt | tgcagtatttagggtggagga | 94 | 0.43 |
54 | 34 | 24388648 | cccttgtaaaggggaggaga | tggctctgaatttaggcattt | 94 | 0.48 |
55 | 12 | 23053279 | agctctcctgctgtgattttt | tgcagacaaatggactgaaga | 98 | 0.44 |
56 | 20 | 29687857 | tgagcacgaagaggtagagaag | tcaagtgcaagtcaccaaact | 100 | 0.43 |
57 | 30 | 37964459 | cgtgaatggtccaaaatgat | catcagcatttccagagttctt | 100 | 0.26 |
58 | 13 | 42973844 | tttctgggcaaaaacagtga | tttagatgggagggaatggtt | 108 | Excluded |
59 | 5 | 91665974 | accttctgtttcccctttgg | agagcgcagcagagatgact | 103 | 0.00 |
60 | 4 | 43098715 | gtttacaccacccagcctga | aggcagttacaggcattaatca | 109 | 0.40 |
61 | 20 | 40585796 | cccatccctgaggaagagag | ggacacccgcatttctgtc | 114 | 0.12 |
62 | 7 | 8798933 | cccagaaaacaagagaaggaaa | tgttggcagatctcatggtc | 114 | 0.00 |
63 | 14 | 23314695 | acccaccagattggctaaaa | tcgaacaggtccagtttacatt | 116 | 0.26 |
64 | 26 | 35769409 | cctggcttaaccccttacct | aaccgctatcccacattctg | 96 | 0.00 |
65 | 4 | 56495029 | tcccactgtagcttgaaaacg | ttcaggtattgctgtccaaaaa | 95 | 0.51 |
66 | 17 | 19537687 | atgctttgcagagatgcttg | tgctcatgtcagaacagagagg | 94 | 0.31 |
67 | 31 | 26928202 | atgaacaagcaccccaaaac | cagtccacttcaatgcacca | 68 | 0.27 |
68 | 10 | 66801300 | ccccaaattaagggaagttca | tccatgaccaaatctgcatc | 70 | 0.12 |
69 | 10 | 63275151 | tccagaacttggagagaatcaa | tccaggcaagactatgagca | 70 | 0.30 |
70 | 5 | 58727403 | ctggaccacatatggcttga | tgccggagagatacgtgtaa | 72 | 0.00 |
71 | 5 | 29583832 | ccacacagtgttgcctgtagt | ggaaagcacagaaagttgtgaa | 73 | 0.49 |
72 | 11 | 25068367 | cccctgcttgtgctctctc | ctctcagcaacccacagagat | 75 | 0.49 |
73 | 19 | 54304531 | aagccttgcacttgagcttg | ccattggaaaggcacgtact | 77 | 0.27 |
74 | 30 | 39573069 | gcttttgtcatgaaacaccaa | ccaccagatgctcaagtctg | 79 | 0.48 |
75 | 19 | 55236292 | gcccacagggtctttattttt | gcttgggtctcttcctctctc | 78 | 0.33 |
76 | 3 | 53761240 | ctgtggtgcagcggtttag | ggagcctgacatgggactt | 78 | 0.00 |
77 | 4 | 90768017 | gttctccctgtgtctgactgtt | aaagaccaaggggtgaaaga | 84 | 0.13 |
78 | 11 | 57430384 | agggacagacccactaagtgtc | tccttaggcgacatggagac | 86 | Excluded |
79 | 36 | 32128918 | tgatatagccgaagtcaggaag | aatggaaagatcatccagacag | 89 | 0.40 |
80 | 14 | 49479392 | tttcaaattgctgaatgttgg | ccctggtctccaggatcac | 89 | 0.47 |
81 | 27 | 13108059 | cagccaattggacacaaaaa | aaaatcaagatgtcagcagagg | 88 | 0.00 |
82 | 6 | 61627505 | gtcatgatcccatggtccta | gtagaggggcagagggagag | 88 | 0.00 |
83 | 36 | 14699428 | gtgttttcttttgggcaagg | tgcaaccaacacacagatga | 92 | 0.49 |
84 | 32 | 36108071 | cccagtgttggtcacatataca | gcgatgaaaattgggaaaga | 96 | Excluded |
85 | 17 | 57586353 | gtgattagggttgaggggaga | ttttccatcaaggtttgtcca | 97 | 0.42 |
86 | 5 | 16750608 | aattttccaggaggctttgg | ttccctcctgctgatctagg | 98 | 0.06 |
87 | 19 | 43306776 | tggggtaaatcagtgagtgaag | ggcattaagagaagcctgctg | 99 | 0.07 |
88 | 29 | 43945653 | aacccgaataacattaggagga | tgggtttaagctggttacgg | 104 | 0.51 |
89 | 5 | 31951980 | cccagaaatccacttaatgacc | tgtgttaccagggctaggttc | 104 | 0.44 |
90 | 7 | 50783779 | ggttagcttagctcctctccaa | agccacatgctgaaaggaag | 104 | 0.00 |
91 | 31 | 10957463 | ttggcaactgccttacaataaa | ttgaatgtggacatgaaacaaa | 106 | 0.47 |
92 | 16 | 6629437 | gaaatgggaaggttttattcca | ggtgctgacaacagaaaacct | 109 | 0.46 |
93 | 5 | 75136583 | aggacacagacagatgtgagga | ccgaagaggaatctgcactc | 111 | 0.00 |
94 | 3 | 89213750 | gagaacttcgatgtgagggaat | ctctcccaccaaaaatctcct | 113 | 0.29 |
95 | 21 | 51457175 | aggcattcagggtgttaaaaa | tggtgaactggaaagtagctga | 108 | 0.51 |
96 | 12 | 53379600 | ttcccaaggagttggagaga | gctgagggcagctgtgttat | 68 | 0.00 |
97 | 14 | 58723304 | ccctgtggtaaccatcaacc | caaagtgaacaagcaaagcaa | 67 | 0.51 |
98 | 3 | 11002853 | ccactggccctaagtgactg | ttagggttttaaaggctgtgc | 70 | 0.06 |
99 | 30 | 30015918 | tcaggttttggatttgaagga | taagcacaaccattagctcca | 72 | 0.06 |
100 | 7 | 65831405 | gaggttcaaatttcccatatcc | gggatccatgcaaaatagttc | 73 | 0.37 |